Package index • momo

All functions

add.lab(): Add a label to a plot

add.report(): Add TMB's report

add.sdreport(): Add TMB's sdreport

create.grid(): Create a grid

def.conf(): Generate default configuration list

def.map(): def.map

def.par(): def.par

fit.momo(): Fit the movement model

get.cfl(): Get Courant–Friedrichs–Lewy condition

get.diag(): Get diagnostics for residuals

get.dim(): Get dimensions from tagging data

get.lower.bounds(): Lower bounds

get.neighbours(): Get neighbours for each cell of a grid

get.peclet(): Get peclet number

get.precision.matrix(): Get precision matrix

get.release.events(): Get release events

get.sim.funcs(): Simulate functions

get.upper.bounds(): Upper bounds

habi.full(): Full habitat function

habi.light(): Light habitat function

model.version.info(): Description of model

momo.cols(): Momo colors

nll(): Negative log likelihood function

plot(<land>): Plot land masses

plotmomo.atags(): Plot archival tags

plotmomo.compare(): Compare plot

plotmomo.compare.one(): Plot to compare single quantity

plotmomo.ctags(): Plot mark-recapture tags

plotmomo.data(): Plot data

plotmomo.dif(): Plot diffusion

plotmomo.effort(): Plot effort fields

plotmomo.env(): Plot environmental fields

plotmomo.grid(): Plot grid

plotmomo.pref(): Plot habitat preference function

plotmomo.pref.spatial(): Plot spatial habitat preference

plotmomo.resid(): Plot residuals

plotmomo.sim(): Plot simulated data

plotmomo.stags(): Plot mark-resight tags

plotmomo.taxis(): Plot taxis

prep.atags(): Prepare data-logging tags

prep.ctags(): Prepare mark-recapture tags

prep.effort(): Prepare effort data

prep.env(): Prepare environmental data

prep.stags(): Prepare mark-resight tags

setup.momo.data(): Set-up input data for the movement model

sim.alpha(): Simulate alpha

sim.atags(): Simulate archival tags

sim.ctags(): Simulate mark-recapture tags

sim.env(): Simulate environmental fields

sim.momo(): Simulate a simple data set