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All functions

advancepop()
advancepop
baranov()
baranov
check.dat()
check.dat
check.set()
check.set
def.hcr.conscat()
Define a constant-catch harvest control rule
def.hcr.index()
Define an index-based harvest control rule
def.hcr.pseudo()
Define harvest control rule with pseudo assessment
def.hcr.ref()
def.hcr.ref
def.hcr.sam()
Define harvest control rule for SAM
def.hcr.spict()
Define a SPiCT-based harvest control rule
est.cons.mets()
est.cons.mets
est.depletion()
Estimate depletion under alternative fishing mortalities
est.metrics()
est.metrics
est.productivity()
Estimate productivity curve
est.productivity.stochastic()
Estimate stochastic productivity relationship
est.ref.levels()
Estimate deterministic reference points
est.ref.levels.stochastic()
Estimate stochastic reference points
est.tac()
est.tac
fpat()
fpat
gen.noise()
gen.noise
get.converged()
genConvs
get.errs()
get.errs
get.f()
Solve for fishing mortality corresponding to a target TAC
get.leslie.r()
get.leslie.r
get.ssb0()
Calculate spawning stock biomass at F = 0 (SSB0)
getM()
getM
getMat()
getMat
getMsel()
getMsel
getSel()
getSel
gettacs()
gettacs
initdistR()
initdistR
initpop()
initpop
muconv()
muconv
obsmod()
obsmod
plotiamse.b()
Plot biomass time series from an IAMSE MSE
plotiamse.cw()
Plot catch time series from an IAMSE MSE
plotiamse.f()
Plot fishing mortality time series from an IAMSE MSE
plotiamse.prod()
plotiamse.prod
plotiamse.quant()
Plot IAMSE diagnostic / uncertainty quantities
plotiamse.tradeoff()
Plot trade-offs between IAMSE performance metrics
recfunc()
recfunc
run.mse()
run.mse
sbr()
sbr
sdconv()
sdconv
simpop
Simulate an age-based population
stocklist
Example stock list for iamse
summary(<iamse>)
Summarise an IAMSE object